| ABC | ATP-binding cassette |
| AI | Artificial intelligence |
| APC | Article processing charge |
| ASCA | ANOVA-simultaneous component analysis |
| BBCH | Biologische Bundesanstalt, Bundessortenamt and Chemical Industry phenological scale |
| bHLH | Basic helix–loop–helix |
| CAPES | Coordenação de Aperfeiçoamento de Pessoal de Nível Superior |
| CC BY | Creative Commons Attribution |
| COI1 | CORONATINE INSENSITIVE 1 |
| CT-Agro | Fundo Setorial de Agronegócio |
| DAD | Diode-array detection |
| DESI-MSI | Desorption electrospray ionization mass spectrometry imaging |
| DFR | Dihydroflavonol 4-reductase |
| DIMBOA | 2,4-Dihydroxy-7-methoxy-1,4-benzoxazin-3-one |
| DIMBOA-Glc | DIMBOA glucoside |
| DIM2BOA-Glc | 2,4-Dihydroxy-7,8-dimethoxy-1,4-benzoxazin-3-one glucoside |
| DNA | Deoxyribonucleic acid |
| ERF | Ethylene response factor |
| FAIR | Findable, accessible, interoperable, and reusable |
| FBMN | Feature-based molecular networking |
| FINEP | Financiadora de Estudos e Projetos |
| FNDCT | Fundo Nacional de Desenvolvimento Científico e Tecnológico |
| FT-ICR-MS | Fourier transform ion cyclotron resonance mass spectrometry |
| FTIR | Fourier transform infrared spectroscopy |
| GC-FID | Gas chromatography with flame ionization detection |
| GC-MS | Gas chromatography-mass spectrometry |
| GC-MS/MS | Gas chromatography-tandem mass spectrometry |
| GNPS | Global Natural Products Social Molecular Networking |
| HCA | Hierarchical cluster analysis |
| HPLC | High-performance liquid chromatography |
| HPLC-DAD | High-performance liquid chromatography with diode-array detection |
| HPLC-HRESIMS | High-performance liquid chromatography-high-resolution electrospray ionization mass spectrometry |
| HPLC-MS | High-performance liquid chromatography-mass spectrometry |
| HPTLC | High-performance thin-layer chromatography |
| HS-SPME | Headspace solid-phase microextraction |
| HS-SPME/GC-MS | Headspace solid-phase microextraction coupled to gas chromatography-mass spectrometry |
| ID | Identifier |
| IMS-MS | Ion mobility spectrometry-mass spectrometry |
| JA | Jasmonic acid |
| JA-Ile | Jasmonoyl-isoleucine |
| JAZ | JASMONATE ZIM-domain protein |
| LC-HRMS | Liquid chromatography-high-resolution mass spectrometry |
| LC-MS | Liquid chromatography-mass spectrometry |
| LC-MS/MS | Liquid chromatography-tandem mass spectrometry |
| LOD | Limit of detection |
| LOESS | Locally estimated scatterplot smoothing |
| LOQ | Limit of quantification |
| MALDI | Matrix-assisted laser desorption/ionization |
| MALDI-MSI | Matrix-assisted laser desorption/ionization mass spectrometry imaging |
| MCTI | Ministério da Ciência, Tecnologia e Inovação |
| MIAPPE | Minimum Information About a Plant Phenotyping Experiment |
| miR156 | microRNA156 |
| miR156b | microRNA156b |
| MS | Mass spectrometry |
| MS/MS | Tandem mass spectrometry |
| MS2LDA | MS2 Latent Dirichlet Allocation |
| MSI | Mass spectrometry imaging |
| MYB | MYB transcription factor family |
| MYC2 | MYC2 transcription factor |
| NAC | NAM, ATAF1/2, and CUC2 transcription factor family |
| NIC2 | Nicotine biosynthesis 2 locus |
| NMR | Nuclear magnetic resonance |
| 1H NMR | Proton nuclear magnetic resonance |
| NPClassifier | Natural Products Classifier |
| OPLS-DA | Orthogonal partial least squares discriminant analysis |
| PCA | Principal component analysis |
| PERMANOVA | Permutational multivariate analysis of variance |
| PLS | Partial least squares |
| PLS-DA | Partial least squares discriminant analysis |
| PRPPG | Pró-Reitoria de Pesquisa e Pós-Graduação |
| QC | Quality control |
| QqQ | Triple quadrupole |
| RNA | Ribonucleic acid |
| RNA-Seq | RNA sequencing |
| ROC | Receiver operating characteristic |
| RWC | Relative water content |
| SPAD | Soil plant analysis development chlorophyll index |
| SPL | SQUAMOSA promoter-binding protein-like |
| SPL9 | SQUAMOSA promoter-binding protein-like 9 |
| UHPLC | Ultra-high-performance liquid chromatography |
| UHPLC-DAD | Ultra-high-performance liquid chromatography with diode-array detection |
| UHPLC-HRMS/MS | Ultra-high-performance liquid chromatography-high-resolution tandem mass spectrometry |
| UHPLC-QqQ-MS/MS | Ultra-high-performance liquid chromatography-triple-quadrupole tandem mass spectrometry |
| UPLC | Ultra-performance liquid chromatography |
| UPLC-MS/MS | Ultra-performance liquid chromatography-tandem mass spectrometry |
| UV | Ultraviolet |
| WRKY | WRKY transcription factor family |