| AMFV | Apis mellifera filamentous virus |
| BQCV | Black queen cell virus |
| CBPV | Chronic bee paralysis virus |
| LSV | Lake Sinai virus |
| ORF | Open reading frame |
| RdRp | RNA-dependent RNA polymerase |
| RNA-seq | RNA sequencing |
| V/H ratio | viral/host read ratio |
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