Table 2.
List of the 10 longest human TFRs
TFR ID | Genomic position | Length (bp) | P valuea | % G + C | % bases conservedb | Overlapping genes | % exonic bases |
---|---|---|---|---|---|---|---|
chr7.119 | chr7:26938206 | 81208 | <10-75 | 52 | 45 | HOXA4-11 | 17 |
chr5.354 | chr5:92928424 | 57661 | <10-54 | 46 | 37 | NR2F1 | 14 |
chr2.598 | chr2:176777785 | 53918 | <10-48 | 52 | 38 | HOXD8-13 | 18 |
chr11.129 | chr11:31759920 | 46909 | <10-45 | 49 | 35 | PAX6 | 5 |
chr17.162 | chr17:43994277 | 46224 | <10-41 | 52 | 42 | HOXB4-6 | 19 |
chr13.226 | chr13:99405192 | 43687 | <10-42 | 52 | 43 | ZIC2, ZIC5 | 12 |
chr5.305 | chr5:87986303 | 40148 | <10-33 | 44 | 35 | MIRN9-2 | 0 |
chr2.316 | chr2:104910522 | 39265 | <10-39 | 49 | 34 | POU3F3 | 4 |
chr15.252 | chr15:94658960 | 37951 | <10-37 | 48 | 53 | NR2F2 | 8 |
chr7.319 | chr7:96264636 | 37555 | <10-34 | 49 | 37 | DLX5 | 4 |
Probability of finding one or more TFRs of this length in the subset of the genome with the same GC content (see Methods)
Percent of bases that are covered by conserved regions described by Siepel et al. (2005)