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Summary of presence of BDGP annotations in alignment, and in our RIR findings in D. melanogaster R4
| Chr arm | BDGPTrans | Not in alignment | NOT in RIR (false negative) | In RIR (true positive) |
|---|---|---|---|---|
| X | 276 | 8 | 52 | 216 |
| 2L | 305 | 16 | 62 | 227 |
| 2R | 312 | 3 | 52 | 257 |
| 3L | 288 | 13 | 65 | 210 |
| 3R | 288 | 5 | 64 | 219 |
| 4 | 102 | 21 | 33 | 48 |
