Table 2.
Detection panel and positive rates of the 21 respiratory pathogens (n = 21,395), by category (10 viruses, 6 bacteria, 2 fungi, 3 Chlamydia/Mycoplasma).
| Category | Pathogen | Abbreviation | Positive cases | Positive rate |
|---|---|---|---|---|
| Viruses | SARS-CoV-2 | SARS-CoV-2 | 835 | 3.90% |
| Viruses | Influenza virus | IV | 2,126 | 9.94% |
| Viruses | Respiratory syncytial virus | RSV | 864 | 4.04% |
| Viruses | Adenovirus | AdV | 672 | 3.14% |
| Viruses | Human metapneumovirus | hMPV | 437 | 2.04% |
| Viruses | Parainfluenza virus | PIV | 691 | 3.23% |
| Viruses | Common coronavirus | CoV | 574 | 2.68% |
| Viruses | Bocavirus | BoV | 176 | 0.82% |
| Viruses | Rhinovirus | RV | 1,911 | 8.93% |
| Viruses | Enterovirus | EV | 770 | 3.60% |
| Bacteria | Streptococcus pneumoniae | SP | 2,314 | 10.82% |
| Bacteria | Haemophilus influenzae | HI | 3,296 | 15.41% |
| Bacteria | Group A Streptococcus | GAS | 218 | 1.02% |
| Bacteria | Bordetella pertussis | BP | 57 | 0.27% |
| Bacteria | Legionella spp. | LP | 7 | 0.03% |
| Bacteria | Klebsiella pneumoniae | KP | 617 | 2.88% |
| Fungi | Aspergillus | AF | 80 | 0.37% |
| Fungi | Cryptococcus | CN | 6 | 0.03% |
| Chlamydia/Mycoplasma | Mycoplasma pneumoniae | MP | 261 | 1.22% |
| Chlamydia/Mycoplasma | Chlamydia psittaci | CP | 10 | 0.05% |
| Chlamydia/Mycoplasma | Chlamydia pneumoniae | Cpn | 73 | 0.34% |