Table 1.
Falsifiable predictions of the lysosomal-stress cargo-fate hypothesis in TNBC.
| Prediction | Testable design | Expected interpretation and falsifier |
|---|---|---|
| RIPK1 effects extend beyond the Manzamine A model. | Compare pharmacological and genetic RIPK1 perturbation across mechanistically distinct lysosomal stressors and molecularly distinct TNBC models; where feasible, rescue with wild-type or kinase-inactive RIPK1. | Reproducible effects across stressors and models support broader involvement. Restriction to Manzamine A would define a drug- and context-specific role. |
| A transcriptional mechanism predicts RIPK1-dependent changes in RASAL2 expression. | Use serial RASAL2 mRNA and protein measurements, followed by promoter, chromatin or transcriptional-reporter assays. | An mRNA change preceding protein and phenotype supports transcriptional regulation. Protein-state changes without transcript change argue against it. |
| A post-translational mechanism predicts changes in RASAL2 protein state without corresponding transcript changes. | Measure RASAL2 phosphorylation, localization, stability and binding partners under stress and RIPK1 perturbation. | A reproducible protein-state change with stable mRNA supports post-translational regulation. No such change weakens this mechanism. |
| RIPK1 and RASAL2 converge functionally. | Apply single and combined perturbations and compare proximal lysosomal or autophagic readouts with downstream MVB and sEV readouts. | Non-additive effects support a shared limiting process or interaction; additive effects support parallel contributions to a common output; no interaction with distinct proximal effects supports independent arms. |
| Direct RASAL2-Rab27a coupling, if present, should be demonstrable independently of intact-cell co-immunoprecipitation. | Use cellular co-IP and Rab27a-GTP results as starting evidence (31). Propose purified-protein or domain-mapping binding assays and a direct Rab27a GTP-hydrolysis assay. | Purified-component binding supports direct interaction; accelerated GTP hydrolysis supports direct GAP activity. Negative results favor indirect regulation. |
| Lysosomal and autophagic changes precede sEV-associated release. | Sample early lysosomal pH, protease activity, membrane integrity and RIPK1-associated changes; intermediate LC3 flux, p62 turnover and autophagosome-lysosome or -MVB relationships; and later Rab27a activity, MVB docking and sEV-associated release. | A pre-death lysosomal/autophagic sequence preceding sEV increase supports cargo-fate switching. Particle increase only after marked injury argues against an active switch. |
| Regulated EV release is separable from death-associated particles. | At each time point assess Annexin V/PI, LDH, caspase-3/7 or PARP and, where relevant, phosphorylated MLKL (40). Normalize particle output to viable cell number and conditioning time (29). | Particle increase coupled to membrane loss, apoptosis, necrosis or necroptosis supports passive or injury-related release rather than regulated cargo-fate switching. |
EV, extracellular vesicle; sEV, small extracellular vesicle; TNBC, triple-negative breast cancer.