Table 1.
Rate constants for cleavage by HDV ribozymes under single-turnover conditions
| ribozyme | conditions* | rate /min−1 |
SD | number of replicates |
|---|---|---|---|---|
| Ackermannviridae ribozyme | ||||
| J1/2 open | N/A | |||
| P4 open | 4.6 | 0.40 | 5 | |
| P4 open C58U | N/A | |||
| C. briggsae ribozyme | ||||
| J1/2 open WT | 0.044 | 0.0016 | 5 | |
| P4 open WT | 9.3 | 1.01 | 4 | |
| P4 open WT | 2 mM Ca2+ | 11.1 | 1.45 | 4 |
| P4 open WT | 2 mM Mn2+ | 6.7 | 1.59 | 4 |
| P4 open WT | MES (pH 6.0) | 2.4 | 0.29 | 4 |
| P4 open WT | MES (pH 6.7) | 5.1 | 0.50 | 3 |
| P4 open WT | Tris (pH 8.5) | 9.9 | 1.12 | 4 |
| P4 open C57U | N/A | |||
| P4 open G25O6S | 0.010 | 0.0016 | 3 |
* other than standard conditions 20 mM Tris.HCl (pH 7.5), 2 mM MgCl2.
N/A no activity detectable; SD standard deviation.