TABLE 4.
RMSD in alpha-carbon positions for comparisons with some other human picornavirusesa
| EV11 protein (no. of residues) | RMSD in alpha-carbon position (Å) versus that for:
|
||||
|---|---|---|---|---|---|
| EV1 (1EV1 [13]) (VP1, 281 residues; VP2, 254 residues; VP3, 239 residues) | CAV9 (1D4M [17]) (VP1, 299 residues; VP2, 261 residues; VP3, 238 residues) | Coxsackievirus B3 (1COV [31]) (VP1, 281 residues; VP2, 263 residues; VP3, 238 residues) | Type 1 poliovirus (2PLV [12]) (VP1, 302 residues; VP2, 272 residues; VP3, 238 residues) | Human rhinovirus 14 (4RHV [1]) (VP1, 289 residues; VP2, 262 residues; VP3, 238 residues) | |
| VP1 (289) | 0.8 (278) | 1.0 (277) | 0.9 (266) | 1.5 (266) | 1.8 (264) |
| VP2 (254) | 0.6 (250) | 0.6 (250) | 0.7 (250) | 1.7 (250) | 1.2 (249) |
| VP3 (240) | 0.8 (237) | 0.8 (234) | 0.7 (237) | 0.8 (234) | 1.0 (235) |
a
The root-mean square deviation (RMSD) in alpha-carbon positions is presented for the major capsid proteins of EV11 compared with proteins from some other human picornaviruses. The numbers of equivalent alpha carbons used to calculate the RMSD are shown in parentheses after the RMSD. The names and protein data bank codes for the other viruses are shown.