TABLE 2.
Oligonucleotide primers used in RT-PCR and sequencing
| Primer | Sequence | Positionsa |
|---|---|---|
| HAV1 | GTTTTGCTCCTCTTTATCATGCTATG | 2167-2192 |
| HAV2 | AGTCACACCTCTCCAGGAAAACTT | 3308-3285 |
| HAV3 | TTCATTATTTCATGCTCCTC | 3286-3267 |
| HAV4 | ACAAATAACAACTAAAAGACAA | 2955-2934 |
| HAV5 | TTGTCTTTTAGTTGTTATTTGTC | 2934-2956 |
| HAV6 | AGGAAATGTCTCAGGTACTTTCTTTG CTAAAACTG | 2414-2380 |
| HAV7 | CTGGAGTGAACCAGGCCATGCCATC | 2691-2667 |
| HAV8 | AGAGTCATATAGATTGCAGG | 3106-3125 |
| HAV9 | GAGCACTGGATGGTTTGGG | 2845-2863 |
| HAV10 | TTGTTCTTTAATTTCCTG | 3674-3657 |
a
Positions relative to the genome of HAV strain HM-175 (M14707).