TABLE 2.
Percent amino acid identity of BEC-NB virus with other caliciviruses in regions aligned for phylogenetic comparisona
| Genus | Virusb | % Identity
|
|||||
|---|---|---|---|---|---|---|---|
| ORF-1 NS | 2C helicase | 3C protease | RdRp | VP1 | VP2c | ||
| SLV | Manchester | 21.1 | 37.4 | 35.4 | 33.0 | 21.0 | 16.9 |
| PEC | 21.7 | 40.0 | 30.7 | 34.8 | 19.9 | 13.9 | |
| NLV | Jena | 15.0 | 31.2 | 14.2 | 29.8 | 14.7 | 17.0 |
| Norwalk | 14.7 | 31.2 | 17.5 | 30.7 | 15.7 | 15.5 | |
| SOV | 13.8 | 31.9 | 16.2 | 29.8 | 15.4 | 16.1 | |
| Hawaii | 14.3 | 29.4 | 14.9 | 27.5 | 14.6 | 12.9 | |
| Lordsdale | 14.1 | 29.4 | 14.2 | 28.4 | 14.8 | 17.3 | |
| Vesivirus | VESV-A48 | 21.5 | 40.6 | 30.4 | 32.5 | 17.8 | 16.2 |
| SMSV-1 | 22.3 | 41.9 | 30.4 | 33.0 | 17.8 | 16.2 | |
| PAN-1 | 22.0 | 40.6 | 32.0 | 32.1 | 17.8 | 15.3 | |
| WCV | 22.3 | 41.2 | 30.4 | 33.0 | 18.2 | 15.3 | |
| FCV-F4 | 21.8 | 40.6 | 25.0 | 34.8 | 17.8 | 16.8 | |
| FCV-F9 | 22.6 | 40.6 | 24.2 | 34.8 | 18.0 | 15.0 | |
| Lagovirus | EBHSV | 21.9 | 37.8 | 24.0 | 41.0 | 26.6 | 20.0 |
| RHDV | 21.6 | 36.5 | 22.4 | 40.5 | 26.7 | 21.2 | |
a
See Table 1 and footnotes for descriptions of aligned regions.
b
EBHSV, European brown have syndrome virus; VESV, vesicular exanthema of swine virus; SMSV, San Miguel sea lion virus; WCV, walrus calicivirus.
c
Sequence identities calculated for complete VP2 ORF alignment.