TABLE 1.
Protein | No. of synthetic peptides | Magnitude of response (SFC/106 PBMC)
|
Density of responseb | Frequency of high CTL responses (%)c | No. (%d) of nonresponsive peptides | ||
---|---|---|---|---|---|---|---|
Mean ± SD | Median | Range | |||||
Gag p17 | 13 | 258 ± 143 | 200 | 100-556 | 0.046 | 5.7 | 1 (7.7) |
Gag p24 | 24 | 388 ± 270 | 300 | 100-1,447 | 0.078 | 23.4 | 0 |
Gag p2/p7/p1/p6 | 14 | 292 ± 162 | 271 | 100-786 | 0.046 | 10.5 | 2 (14.3) |
Pol protease | 13 | 163 ± 67 | 135 | 107-338 | 0.040 | 0 | 1 (7.7) |
Pol RT | 44 | 226 ± 192 | 168 | 100-1,195 | 0.031 | 5.3 | 17 (38.6) |
Pol RNase H | 17 | 214 ± 110 | 210 | 102-438 | 0.010 | 0 | 9 (52.9) |
Pol integrase | 38 | 227 ± 106 | 190 | 108-672 | 0.025 | 1.6 | 18 (47.4) |
Vif | 18 | 223 ± 122 | 187 | 104-817 | 0.048 | 2.1 | 1 (5.6) |
Vpr | 9 | 196 ± 73 | 196 | 101-403 | 0.067 | 0 | 0 |
Tat | 18 | 249 ± 115 | 218 | 117-667 | 0.061 | 6.6 | 5 (27.8) |
Rev | 19 | 244 ± 143 | 220 | 100-1,074 | 0.049 | 2.0 | 0 |
Vpu | 11 | 142 ± 51 | 122 | 100-269 | 0.030 | 0 | 2 (18.2) |
Env gp120 | 52 | 180 ± 115 | 146 | 100-916 | 0.023 | 2.7 | 18 (34.6) |
Env gp41 | 34 | 213 ± 117 | 179 | 101-769 | 0.041 | 3.8 | 6 (17.6) |
Nef | 30 | 278 ± 152 | 241 | 100-1,057 | 0.085 | 7.2 | 0 |
The magnitudes and densities were computed using samples with a positive response only.
Density was computed as the number of CTL responses higher than 100 SFC/106 PBMC within the protein normalized by the number of peptides used and the number of samples tested [density = number of CTL responses/(number of peptides × number of samples)].
Percentage of responses that were equal to or higher than 500 SFC/106 PBMC out of the total number of responses within a particular viral protein.
Percentage of peptides with no responses out of the total number of synthetic peptides within a particular viral protein.