TABLE 2.
Analysis of 2-series variants by RNase protection assay and Northern blottinga
| DHBV | RNase protection assay
|
Northern blotting
|
|||
|---|---|---|---|---|---|
| pgb | pre-S/Sc | Splicedd | pgb | sge | |
| WT | 1.00 | 0.10 ± 0.04 | 0.45 ± 0.08 | 1.00 | 0.69 ± 0.04 |
| B2 | 0.09 ± 0.01 | 0.12 ± 0.04 | 0.96 ± 0.04 | 0.08 ± 0.02 | 1.25 ± 0.01 |
| A2 | 0.07 ± 0.02 | 0.12 ± 0.05 | 1.01 ± 0.04 | 0.07 ± 0.02 | 1.31 ± 0.07 |
| A2/B2 | 0.68 ± 0.13 | 0.39 ± 0.14 | 0.55 ± 0.05 | 0.73 ± 0.06 | 1.10 ± 0.10 |
Values are based on measurements made on poly(A)+ RNA isolated from independent transfections, with two for the wild type (WT) and B2, and four for A2 and A2/B2. First, all DHBV RNA levels were normalized to the level of GFP mRNA. Then, the value of WT pgRNA was set to 1.00 and all other RNA levels were accordingly adjusted, and then the mean and standard deviation were calculated.
Pregenomic class of RNAs.
pre-S/S RNA.
Spliced RNA.
Subgenomic class of RNAs.