Term	Definition
AID	Activation-induced deaminase
AJCC	American Joint Committee on Cancer
APOBEC	Apolipoprotein B mRNA-editing enzyme catalytic polypeptide-like
CI	Confidence interval
CIBERSORT	Cell-type Identification By Estimating Relative Subsets Of RNA Transcripts
COSMIC	Catalogue of Somatic Mutations in Cancer
ESTIMATE	Estimation of Stromal and Immune cells in Malignant Tumors
FDR	False discovery rate
GDC	Genomic Data Commons
GTEx	Genotype-Tissue Expression project
HR	Hazard ratio
mRNAsi	mRNA-based stemness index
PD-L1	Programmed death-ligand 1 (CD274)
SBS	Single-base substitution (mutational signature)
TCGA	The Cancer Genome Atlas
TIMER	Tumor Immune Estimation Resource
TME	Tumor microenvironment