| DIA-MS | Data-independent acquisition mass spectrometry |
| LC-MS/MS | Liquid chromatography–tandem mass spectrometry |
| DIA-NN | Data-independent acquisition by neural networks |
| MAE | Mean absolute error |
| R2 | Coefficient of determination |
| EDTA | Ethylenediaminetetraacetic acid |
| TEAB | Triethylammonium bicarbonate |
| TCEP | Tris(2-carboxyethyl)phosphine |
| CAA | Chloroacetamide |
| AGC | Automatic gain control |
| ECM | Extracellular matrix |
| BMI | Body mass index |
| CRP | C-reactive protein |
| FGB | Fibrinogen beta chain |
| FGG | Fibrinogen gamma chain |
| SERPINA3 | Alpha-1-antichymotrypsin |
| ITIH4 | Inter-alpha-trypsin inhibitor heavy chain H4 |
| C5 | Complement component C5 |
| C4BPA | C4b-binding protein alpha chain |
| CP | Ceruloplasmin |
| AMBP | Alpha-1-microglobulin/bikunin precursor |
| HPX | Hemopexin |
| A1BG | Alpha-1B-glycoprotein |
| ZA2G | Zinc-alpha-2-glycoprotein |
| PRIDE | Proteomics Identifications Database |
| ProteomeXchange | Proteomics data exchange consortium |
| HUPO | Human Proteome Organization |
| CV | Cross-validation |
| OOF | Out-of-fold |
| FDR | False discovery rate |
| PCA | Principal-component analysis |
| CI | Confidence interval |
| GB | Gradient Boosting |