TABLE 2.
RMSD values within separate simulations
| System | No. of frames | RMSD, backbone (Å) | RMSD, all heavy atoms (Å) | RMSD to NMR, all heavy atoms (Å)* | RMSD to NMR, backbone (Å)* |
|---|---|---|---|---|---|
| NMR† | 10 | 0.41 ± 0.13 | 1.94 ± 0.48 | — | — |
| 2:128‡ | 40 | 0.57 ± 0.057 | 2.98 ± 0.22 | 2.25 | 0.45 |
| 2:128§ | 160 | 0.57 ± 0.051 | 2.53 ± 0.40 | 1.97 | 0.44 |
| 12:128‡ | 96 | 0.60 ± 0.21 | 2.86 ± 0.62 | 2.00 | 0.43 |
| 12:128§ | 168 | 0.55 ± 0.21 | 2.83 ± 0.65 | 2.12 | 0.44 |
The RMSD to NMR refers to the deviation of average structures relative to the average NMR structure in DPC micelles, as shown in Fig. 4.
NMR structure bound to DPC micelle.
NMR-derived restraints used during the simulation.
Restraint-free simulation.