TABLE 2.
Hybridization washing results
Initial molar amounts of
|
Expected signal before washing
|
Expected signal after long washing
|
Expect. signal ratio after washing
|
||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
Row | Rev. rate const. kr1 | Immob. A (correct) | Immob. B (incorrect) | C (sol.) | A (correct) | B (incorrect) | A (correct) | B (incorrect) | for opt. time | at t = 1000 | Opt. wash time |
1 | 0.01 | 10 | 1 | 1 | 0.98 | 0.01 | 0.883 | 0.0096 | 144.4 | 92 | 9 |
2 | 0.01 | 1 | 1 | 1 | 0.745 | 0.226 | 0.359 | 0.053 | 15.03 | 6.77 | 32 |
3 | 0.01 | 1 | 1 | 10 | 1 | 0.99 | 0.567 | 0.116 | 6.66 | 4.9 | 40 |
4 | 0.01 | 1 | 10 | 1 | 0.39 | 0.6 | 0.269 | 0.354 | 1.1 | 0.758 | 17 |
5 | 0.01 | 1 | 10 | 10 | 0.98 | 8.47 | 0.839 | 3.42 | 0.251 | 0.245 | 24 |
6 | 0.001 | 10 | 1 | 1 | 1 | 0.001 | 0.99 | 0.001 | 1526 | 902 | 9 |
7 | 0.001 | 1 | 1 | 1 | 0.9 | 0.086 | 0.714 | 0.024 | 79.7 | 29.5 | 43 |
8 | 0.001 | 1 | 1 | 10 | 1 | 0.988 | 0.908 | 0.09 | 10.99 | 10.09 | 60 |
9 | 0.001 | 1 | 10 | 1 | 0.73 | 0.27 | 0.644 | 0.176 | 5.17 | 3.65 | 24 |
10 | 0.001 | 1 | 10 | 10 | 0.99 | 8.45 | 0.981 | 3.372 | 0.291 | 0.291 | 45 |
The rate constants for these simulations were kf1 = kf2 = 1; kr2 = 0.1. The washing dilution factor was set at 100. All washings were done for a time of 1000. By this time, CB had come to a virtual equilibrium, but CA generally was still decreasing.