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. 2006 Feb;50(2):445–452. doi: 10.1128/AAC.50.2.445-452.2006

TABLE 1.

Oligonucleotides used for sequencing the genes encoding the 16S rRNA and the ribosomal proteins S5 and S12

Oligonucleotide name Gene Sequence
rpsE U322F rpsE (S5) 5′-AATAAAGGACAAAATAGGG-3′
rpsE 441R rpsE (S5) 5′-CAAAACTAAATCAAATGCC-3′
16S U169F 16S rRNA 5′-AATGACCTAAAATTAAGTCTAA-3′
16S 40F 16S rRNA 5′-TTGTTACGACTTCACCCCCCTC-3′
16S 553F 16S rRNA 5′-TCAAGCCCTGGTAAGGTTCC-3′
16S 659R 16S rRNA 5′-GAGTATGCTCGCAAGAGTG-3′
16S 993R 16S rRNA 5′-CGTTGTTCGGGATTATTG-3′
16S 1060F 16S rRNA 5′-TCATCACTTTGTCATTTC-3′
16S 1538R 16S rRNA 5′-AAATAACGAAGAGTTTGATCC-3′
BB425 3F 16S rRNA 5′-GGAAGATGAGAGAAGGGAAG-3′
BB426 288F 16S rRNA 5′-AGGATTCGCCTTTGCCAAG-3′
rpsG 58R rpsL (S12) 5′-AATTATATCTGGTATCAACAAAAAC-3′
rpsL U106F rpsL (S12) 5′-AAAATTAAAGTTAGTGAAAATATCG-3′