TABLE 1.
Capacity of HCV-specific HLA-A2.1-restricted peptide epitope to bind to purified recombinant HLA-A2.1 molecules and to induce specific CTL or IFN-γ-producing T cells after direct injection
| Gene | Residue (aa) | Epitope
|
Binding (% inhibition)a | ELISPOT (no. of specific spots/106 cells)b
|
Specific lysis (%) (E/T = 33)c
|
|||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Sequence | Name | Mc | M1 | M2 | M3 | Mc | M1 | M2 | M3 | |||
| C | 35-44 | YLLPRRGPRL | C35-44 | 58 | 12 | 73 | 160 | 73 | 2 | 5 | 23 | 2 |
| 132-140 | DLMGYIPLV | C132-140 | 71 | 0 | 211 | 206 | 284 | 4 | 44 | 19 | 26 | |
| E1 | 220-227 | IMHTPGCV | E1 220-227 | 55 | 0 | 0 | 55 | 0 | 1 | 2 | 0 | 14 |
| 257-266 | TIRRHVDLLV | E1 257-266 | 0 | ND | ND | ND | ND | ND | ND | ND | ND | |
| 363-372 | SMVGNWAKV | E1 363-372 | 16 | 0 | 172 | 160 | 328 | 0 | 47 | 3 | 66 | |
| E2 | 401-411 | SLVSWLSQGPS | E2 401-411 | 30 | 0 | 0 | 0 | 0 | 0 | 0 | ||
| 614-622 | RLWHYPCTI | E2 614-622 | 92 | 0 | 82 | 47 | 200 | 10 | 34 | 26 | 22 | |
| 686-694 | ALSTGLIHL | E2 686-694 | 100 | 0 | 403 | 260 | 112 | 2 | 65 | 10 | 79 | |
| 725-734 | FLLLADARV | E2 725-734 | 66 | 0 | 333 | 215 | 622 | 0 | 83 | 34 | 36 | |
| NS3 | 1073-1081 | CVNGVCWTV | NS3 1073-1081 | 18 | 0 | 5 | 47 | 13 | 2 | 27 | 88 | 0 |
| 1169-1177 | LLCPSGHVV | NS3 1169-1177 | 77 | 2 | 137 | 322 | 160 | 9 | 45 | 7 | 53 | |
| 1406-1415 | KLTGLGLNAV | NS3 1406-1415 | 71 | 0 | 188 | 458 | 230 | 18 | 33 | 15 | 40 | |
| 1585-1593 | YLVAYQATV | NS3 1585-1593 | 76 | 0 | 0 | 173 | 190 | 11 | 7 | 19 | 16 | |
| NS4B | 1769-1777 | HMWNFITGI | NS4B 1769-1777 | 30 | 0 | 162 | 93 | 30 | 0 | 13 | 35 | 0 |
| 1789-1797 | SLMAFTASI | NS4B 1789-1797 | 63 | 71 | 61 | 157 | 177 | 20 | 31 | 15 | 38 | |
| 1807-1816 | LLFNILGGWV | NS4B 1807-1816 | 94 | 0 | 605 | 22 | 658 | 0 | 19 | 12 | 0 | |
| 1851-1859 | ILAGYGAGV | NS4B 1851-1859 | 32 | 0 | 5 | 2 | 0 | 6 | 0 | 0 | 0 | |
| NS5A | 2221-2231 | SPDADLIEANL | NS5A 2221-2231 | 37 | 42 | 102 | 0 | 8 | 4 | 0 | 2 | 2 |
| 2252-2260 | ILDSFDPLR | NS5A 2252-2260 | 34 | 0 | 37 | 0 | 30 | 8 | 0 | 3 | 8 | |
| NS5B | 2578-2587 | RLIVFPDLGV | NS5B 2578-2587 | 100 | 49 | 234 | 116 | 305 | 12 | 41 | 33 | 46 |
| 2594-2602 | ALYDVVSTL | NS5B 2594-2602 | 80 | 39 | 261 | 331 | 326 | 0 | 81 | 44 | 2 | |
| 2727-2735 | KLQDCTMLV | NS5B 2727-2735 | 99 | 25 | 255 | 277 | 297 | 13 | 38 | 52 | 60 | |
Percent inhibition of binding of the FLP-control peptide onto purified HLA.A2.1 molecules for a ratio competitor peptide/control peptide = 30.
ND, not done. Mc, control mouse; M1, M2, and M3, immunized mice.
Percent specific lysis at an E:T ratio of 1:33.