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. 2005 Dec 2;90(4):1260–1269. doi: 10.1529/biophysj.105.067645

FIGURE 9.

FIGURE 9

Geometrical minimization for a group of POPU (A) and POPA (B) molecules performed with Hyperchem 5.1 using AMBER force field. The orientation of purinic rings is strongly altered by the interaction between bases, whereas the pyrimidinic bases keep, more or less, their original conformation.