TABLE 3.
Molecules | Number of base-pairs | Number of atoms in DNA | Number of water molecules | Number of Na(+) ions | Initial box dimension of the solvated PX DNA |
---|---|---|---|---|---|
PX55 | 70 | 4432 | 9211 | 140 | 45 Å × 66 Å × 149 Å |
PX65 | 76 | 4813 | 10360 | 152 | 46 Å × 67 Å × 159 Å |
PX75 | 86 | 5455 | 12272 | 172 | 47 Å × 68 Å × 176 Å |
PX85 | 92 | 5833 | 11331 | 184 | 45 Å × 64 Å × 186 Å |
PX95 | 98 | 6215 | 12138 | 196 | 45 Å × 65 Å × 196 Å |