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. 2006 Mar 1;90(5):1463–1479. doi: 10.1529/biophysj.105.064733

TABLE 3.

Details of the MD simulation conditions for various PX molecules

Molecules Number of base-pairs Number of atoms in DNA Number of water molecules Number of Na(+) ions Initial box dimension of the solvated PX DNA
PX55 70 4432 9211 140 45 Å × 66 Å × 149 Å
PX65 76 4813 10360 152 46 Å × 67 Å × 159 Å
PX75 86 5455 12272 172 47 Å × 68 Å × 176 Å
PX85 92 5833 11331 184 45 Å × 64 Å × 186 Å
PX95 98 6215 12138 196 45 Å × 65 Å × 196 Å