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. 2005 Dec 9;90(5):1546–1559. doi: 10.1529/biophysj.105.068122

TABLE 2.

The model parameters*

Rate constants Other parameters
Inline graphic Inline graphic
Inline graphic Inline graphic p = 4
Inline graphic Inline graphic [p53thresh] = 0.004 μM
Inline graphic Inline graphic μ = 0.006 s−1
Inline graphic Inline graphic ΩApaf-1 = 3 × 10−4μM/s
Inline graphic Inline graphic ΩIAP = 3 × 10−5μM/s
Inline graphic Inline graphic Ωpro3 = 3 × 10−4μM/s
Inline graphic Inline graphic Ωpro9 = 3 × 10−4μM/s
Inline graphic Inline graphic ΩBid = 3 × 10−5μM/s
Inline graphic Inline graphic Inline graphic
Inline graphic Inline graphic Inline graphic
Inline graphic Inline graphic Ωcytmit = 3 × 10−4μM/s
Inline graphic Inline graphic [p53] = 0.0066 μM
Inline graphic Inline graphic
Inline graphic Inline graphic
Inline graphic Inline graphic
Inline graphic Inline graphic
Inline graphic Inline graphic
k11 = 10 s−1 k12a = 10 μM−1s−1
k12b = 10 μM−1s−1 k13 = 10 μM−1s−1
k14 = 10 μM−1s−1

*All rate constants, except for Inline graphic, are set up to within one order of magnitude difference with respect to those used by Asthagiri and Lauffenburger (43) in their simulations of mitogen-activated protein kinase pathways. The ratio of Inline graphic ensures an equilibrium constant of 0.7 nM (56), as well as those used for defining Inline graphic. The values of Inline graphic are suitably set to achieve fluxes comparable to other compounds' fluxes; Inline graphic is assigned a value smaller than Inline graphic because of experimental observations by Riedl et al. (30). The degradation constant of all species is assigned as 0.006 s−1 unless specified otherwise in the text. This value is within the range of parameters used for degradation rate constants adopted by Chen et al. (42) The rates of synthesis are within the range of values used by Chen et al. (42).