TABLE 1.

Primers used in amplification of proviruses

Segment	Primer sequence	Positiona	Orientation
5′LTR	5′-CTACCACACACAAGGCTACT-3′	53-72	5′
5′LTR	5′-CTCGCACCCATCTCTCTCCTT-3′	779-799	3′
1	5′-AGTCAGTGTGGAAAATCTCT-3′	611-632	5′
1	5′-GCTGAAAGCCTTCTCTTCTACTA-3′	1261-1283	3′
2	5′-TAGTAGAAGAGAAGGCTTTCAGC-3′	1261-1283	5′
2	5′-GTCCTTCCTTTCCACATTTCC-3′	2028-2049	3′
3	5′-TGGAAATGTGGAAAGGAAGGAC-3′	2028-2049	5′
3	5′-CCTAATTGAACTTCCCAGAA-3′	2807-2826	3′
4	5′-TTCTGGGAAGTTCAATTAGG-3′	2807-2826	5′
4	5′-ACTGCCTCTGTTAATTGTTT-3′	3644-3663	3′
5	5′-GCAAGGCCAATGGACATATCAA-3′	3547-3568	5′
5	5′-CTACAGTCTACTTGTCCATGCA-3′	4377-4398	3′
6	5′-GATGGAATAGATAAGGCCCAAGA-3′	4271-4290	5′
6	5′-CATCCTGTCTACTTGCCACACA-3′	5047-5066	3′
7	5′-GGAAAGGACCAGCAAAGCT-3′	4932-4940	5′
7	5′-CTGCTATGTCGACACCCAAT-3′	5778-5797	3′
8	5′-ATTGGGTGTCGACATAGCAG-3′	5778-5797	5′
8	5′-GATGCACAAAATAGAGTGGTGGT-3′	6368-6390	3′
9	5′-GATATGAGGGACAATTGGAGAA-3′	7643-7664	5′
9	5′-CTGTCTCTGTCTCTCTCTCCA-3′	8434-8454	3′
10	5′-GTGAATAGAGTTAGGCAGGGAT-3′	8336-8357	5′
10	5′-AGTAGCCTTGTGTGTGGTAG-3′	9137-9156	3′
3′LTR	5′-GCTAGAAGCACAAGAGGAGGA-3′	8966-8986	5′
3′LTR	5′-CTAGAGATTTTCCACACTGACT-3′	9695-9716	3′

^aPrimer position according to the HXB2 provirus sequence numbering.