Table 2.
Summary of repetitive elements identified in the Accipiter gularis genome.
| Class | Copy number | Total length (bp) | % of assembly |
|---|---|---|---|
| Retroelements (total) | 102,648 | 50,591,710 | 4.28 |
| Penelope | 852 | 136,775 | 0.01 |
| LINEs | 57,893 | 22,414,763 | 1.90 |
| L2/CR1/Rex | 57,041 | 22,277,988 | 1.88 |
| LTR elements | 44,755 | 28,176,947 | 2.38 |
| Gypsy/DIRS1 | 217 | 58,562 | 0.00 |
| Retroviral | 25,752 | 18,230,358 | 1.54 |
| DNA transposons | 671 | 224,090 | 0.02 |
| hobo-Activator | 626 | 199,523 | 0.02 |
| Unclassified interspersed repeats | 120,696 | 32,941,029 | 2.79 |
| Total interspersed repeats | – | 83,756,829 | 7.08 |
| Simple repeats | 228,776 | 8,279,211 | 0.70 |
| Low-complexity regions | 44,473 | 1,985,365 | 0.17 |
| Total masked bases | – | 94,021,405 | 7.95 |
Note: LINEs, long interspersed nuclear elements; LTR, long terminal repeat; L2/CR1/Rex, a LINE family; Gypsy/DIRS1, a class of LTR retrotransposons; DNA transposons, class II transposable elements; hobo-Activator, a DNA transposon family.