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. 2026 Oct 9;17:1980516. doi: 10.3389/fmicb.2026.1980516

Figure 4.

Phylogenetic tree diagram showing relationships among Mycobacterium tuberculosis isolates from Western Kenya, with colored dots representing different counties and branches indicating genetic mutations along the horizontal axis.

Maximum-likelihood phylogenetic tree of the 290 M. tuberculosis isolates. The tree was reconstructed using IQ-TREE under the GTR nucleotide substitution model through the Nextstrain/Augur workflow. The horizontal scale represents SNP-scaled phylogenetic branch length and nucleotide divergence along individual branches; it does not represent absolute pairwise genome-wide SNP differences between isolates.