TABLE 1.
CXCR4 Primer Sets and Experimental Conditions for PCR Amplification and DGGE
Temperature (°C) |
|||||
---|---|---|---|---|---|
Fragment | Forward Amplimer, 5′-3′ | Reverse Amplimer, 5′-3′ | Size (bp) | Melting | Annealing |
A | CTCCAGTAGCCACCGCATCT | [40GC]GCTGCGCTCTAAGTTCAAACG | 154 | 73 | 62 |
B | [40GC]GAATGTCCATTCCTTTGCCTCT | GCCTGTACTTGTCCGTCATGC | 286 | 73 | 60 |
C | [40GC]CCACCATCTACTCCATCATC | AGACGCCAACATAGACCAC | 397 | 66 | 55 |
D | CACGCCACCAACAGTCAGA | [40GC]AGCAGGACAGGATGACAATACC | 278 | 71 | 60 |
E | [40GC]CAGTTTCAGCACATCATGGT | AGGATGAGGATGACTGTGGT | 180 | 66 | 55 |
F | CATCTCCAAGCTGTCACACT | [40GC]TTACATCTGTGTTAGCTGGAGT | 445 | 66 | 54 |
G | TCCACTGAGTCTGAGTCTTCAA | [40GC]TCCTGCCTAGACACACATCA | 282 | 67 | 54 |
GC-clamp used was as follows: [40GC] CGCCCGCCGCGCCCCGCGCCCGGCCCGCCGCCCCCGCCCG.