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. Author manuscript; available in PMC: 2006 Feb 16.
Published in final edited form as: J Acquir Immune Defic Syndr. 2005 Dec 15;40(5):521–526. doi: 10.1097/01.qai.0000186360.42834.28

TABLE 1.

CXCR4 Primer Sets and Experimental Conditions for PCR Amplification and DGGE

Temperature (°C)
Fragment Forward Amplimer, 5-3 Reverse Amplimer, 5-3 Size (bp) Melting Annealing
A CTCCAGTAGCCACCGCATCT [40GC]GCTGCGCTCTAAGTTCAAACG 154 73 62
B [40GC]GAATGTCCATTCCTTTGCCTCT GCCTGTACTTGTCCGTCATGC 286 73 60
C [40GC]CCACCATCTACTCCATCATC AGACGCCAACATAGACCAC 397 66 55
D CACGCCACCAACAGTCAGA [40GC]AGCAGGACAGGATGACAATACC 278 71 60
E [40GC]CAGTTTCAGCACATCATGGT AGGATGAGGATGACTGTGGT 180 66 55
F CATCTCCAAGCTGTCACACT [40GC]TTACATCTGTGTTAGCTGGAGT 445 66 54
G TCCACTGAGTCTGAGTCTTCAA [40GC]TCCTGCCTAGACACACATCA 282 67 54

GC-clamp used was as follows: [40GC] CGCCCGCCGCGCCCCGCGCCCGGCCCGCCGCCCCCGCCCG.