TABLE 2.
Structural statistics for the U6 ISL and SP-ISL
| U6 ISL | SP-ISL | |||
| With dipolar coupling data | Without dipolar coupling dataa | With dipolar coupling data | Without dipolar coupling dataa | |
| Structures | ||||
| Accepted | 20 | 40 | 17 | 17 |
| Calculated | 100 | 200 | 100 | 100 |
| NOE-derived distance restraints (per nucleotide) | 506 (21.1) | 521 (21.7) | 322 (13.4) | 322 (13.4) |
| Dihedral restraints | 145 | 145 | 144 | 144 |
| Hydrogen-bond restraints | 25 | 25 | 25 | 25 |
| Dipolar coupling restraints | 31 | — | 40 | — |
| RMSD, all heavy atoms to the mean structure (Å) | ||||
| Overall (62–71, 73, 75–85) | 0.79 ± 0.30b | 1.46 ± 0.4 | 1.05 ± 0.3b | 2.14 ± 0.8 |
| Internal loop (66–68, 78–81) | 0.46 ± 0.2c | 0.44 ± 0.3 | 0.49 ± 0.2c | 0.58 ± 0.4 |
| NOE violations (>0.5 Å) | 0 | 0 | 0 | 0 |
| Ave. dihedral violations (>5.0°) | 0 | 0 | 0 | 0 |
| Ave. NOE RMSD (Å) | 0.027 | 0.018 | 0.029 | 0.041 |
| Ave. dihedral RMSD (°) | 0.640 | 1.270 | 0.710 | 0.761 |
| Ave. RDC RMSD (Hz) | 2.38 ± 0.11 | — | 2.35 ± 0.16 | — |
aPreviously determined (Huppler et al. 2002).
bThe RMSD for all heavy atoms excluding bulged nucleotides (62–71, 73, 75–85) is 1.16 ± 0.4 Å between U6 ISL and SP-ISL RNAs.
cThe internal loop (66–68, 78–81) RMSD for all heavy atoms is 0.55 ± 0.3 Å between U6 ISL and SP-ISL RNAs.