TABLE 1.
Number of deleted nucleotides | ||||||||
Ribozyme | Activity (min−1) | Length (nt) | R1 | R2 | R3 | R4 | R5 | Total |
Init. pool | n/a | 163 | (15) | (25) | (8) | (10 + 11) | (7) | (76) |
da.5.03 | 0.04 | 119 | 3 | 9 | 4 | 27 | 1 | 44 |
da.5.11 | 0.06 | 124 | 3 | 6 | 4 | 24 | 2 | 39 |
da.6.05 | 0.07 | 120 | 4 | 9 | 4 | 26 | 0 | 43 |
da.6.06 | 0.06 | 131 | 10 | 12 | 2 | 6 | 2 | 32 |
da.6.13 | 0.05 | 137 | 2 | 22 | 0 | 2 | 0 | 26 |
da.6.17 | 0.04 | 136 | 4 | 14 | 4 | 5 | 0 | 27 |
da.7.02 | 0.08–0.13 | 124 | 4 | 7 | 3 | 25 | 0 | 39 |
da.7.08 | 0.05–0.09 | 131 | 9 | 10 | 4 | 8 | 1 | 32 |
da.7.13 | 0.07–0.10 | 123 | 2 | 12 | 4 | 21 | 1 | 40 |
da.7.18 | 0.05–0.06 | 127 | 10 | 11 | 4 | 10 | 1 | 36 |
In parentheses are the numbers of deletion/substitution couplings used to create a given variable region (Fig. 2C ▶). Bold numbers highlight deletions significantly larger than expected by chance (assuming a deletion frequency of 0.25, P < 0.01).