TABLE 3.
Human spliceosomal snRNA/LTR recombinant pseudogenesa
snRNA | Position | LTR family | LTR name | Organizationb | BLAT score |
U1 | chr12: 55985209-55985355 | ERV1 | MER39B | E | 109 |
U2 | chr15: 93876266-93876452 | MaLR | MSTB | B | 187 |
U2 | chr5: 157339330-157339493 | ERV1 | MER39 | B | 132 |
U2 | chr11: 65165210-65165389 | MaLR | MLT1G1 | D | 127 |
U2 | chr9: 12290276-12290451 | MaLR | MLT1J2 | E | 81 |
U4 | chr15: 57083982-57084125 | MaLR | MLT1C | B | 102 |
U4 | chr8: 101512746-101512865 | ERV1 | MER4D | A | 88 |
U4 | chr8: 124136078-124136145 | ERVL | ERVL | C | 61 |
U6 | chr10: 98003732-98003834 | MaLR | MLT1F | D | 94 |
U6 | chr20: 42740082-42740187 | ERV1 | LTR35 | F | 92 |
U6 | chr5: 86754877-86754977 | ERVL | ERVL-B4 | A | 87 |
U6 | chr10: 79429135-79429238 | ERV1 | LOR1a | C | 87 |
U6 | chr3: 132093278-132093382 | ERV1 | MER34B-int | A | 85 |
U6 | chr2: 113751197-113751283 | MaLR | MLT1G1 | B | 73 |
U6 | chr1: 11310931-11311006c | ERV1 | LTR48B | A | 70 |
U6 | chr1: 42920646-42920721 | ERV1 | LTR48B | A | 68 |
U6 | chr14: 102857349-102857415 | MaLR | MSTA | B | 55 |