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. 2004 Oct;10(10):1662–1673. doi: 10.1261/rna.7106404

TABLE 1.

Quantification of cmo5U, ho5U, and mo5U compared to Ψ in tRNA from different strains

Strain Relevant genotype Growth conditions ho5U/Ψa mo5U/Ψ cmo5U/Ψ
LT2 Wild type 100 klett 0 N/Db 0.082
LT2 Wild type 24 h 0 N/D 0.079
GT6854 cmoA1<>frt 100 klett 0.041 0.036 N/D
24 h 0.0017 0.087 N/D
GT6945 cmoA4<>frt (ΔSAM) 100 klett 0.084 N/D N/D
GT6856 cmoB2<>frt 100 klett 0.072 N/D N/D
GT6858 cmoAB3<>frt 100 klett 0.072 N/D N/D
GT6909 aroD553::Tn10 100 klett 0.014 0.0081 N/D
24 h 0.011 0.023 N/D

The area of each compound monitored at 290 nm was divided with that of pseudouridine (Ψ) at 254 nm. Cells were either harvested at 100 klett units (about 4 × 108 cells/mL) or after incubation of the culture for 24 h.

aAn unknown compound, comigrating with ho5U, was present in all samples, so all values for ho5U are corrected by subtracting the value found in tRNA from strain LT2 at the same conditions.

b(N/D) Not detected.