. 2004 Dec;10(12):1838–1844. doi: 10.1261/rna.7136104

TABLE 1.

Identities and properties of newly identified alternative exons

CG #	Name	Function	Chr #	Exon #	Exon size	% Identity	Frame	5′ss CNS^a	3′ss CNS^a	Total CNS^a	Type of AS	ESTs^b
CG12891	CPTI	palmitoyltransferase	2R	5	60	96.7	0	3	37	40	mutually exclusive	H/E/S/L/P
CG1522-1	cac	volt-gated Ca²⁺ channel	X	28	201	98	0	30	69	99	cassette exon	H/S
CG1522-2	cac	volt-gated Ca²⁺ channel	X	5	101	100	2	10	46	56	intron retention	H/S
CG18076-2	shot	cytoskeletal binding	2R	34	66	100	0	34	6	40	cassette exon	H/S/L/P/T/O
CG1976	RhoGAP100F	GTPase	3R	8	258	98.1	0	6	30	36	cassette exon	E/S
CG31149a	CG31149	cell–cell signaling	3R	4	204	94.6	0	32	0	32	alternative 5′ splice site	H
CG31149b	CG31149	cell–cell signaling	3R	5	195	97.4	0	7	14	21	alternative 3′ splice site	H
CG31663	CG31663	unknown	2L	11	108	99.1	0	17	44	61	cassette exon	H/T
CG3280	CG3280	unknown	3L	5	105	98.1	0	10	60	70	intron retention	N
CG5226	CG5226	ion transport	2R	9	69	97.1	0	6	124	130	intron retention/cassette exon	H/E/T
CG5620	CG5620	unknown	3L	4	105	98.1	0	11	0	11	alternative 3′ splice site	H/E/T
CG5658	Klp98A	cytoskeletal component	3R	8	123	96.7	0	2	34	36	cassette exon	E/T
CG7832	CG7832	unknown	3R	5	102	95.1	0	33	0	33	intron retention	H/E/L/T/O
CG8566	unc-104	kinesin motor	2R	22	27	96.3	0	22	78	100	cassette exon	H
CG9218c	sm	RNA binding	2R	4	138	98.6	0	22	0	22	alternative 5′ splice site	H/E/S/L/P/T
CG8715a	lig	copulation	2R	15	33	100	0	40	59	99	cassette exon	H/E/S/T
CG2246	CG2246	ribose phosphate kinase	3R	6	57	96.5	0	0	45	45	cassette exon	H/E/L/P/O
CG1455e	CanA1	phosphatase	3R	11	85	96.5	1	0	35	35	cassette exon	H/E
CG17964	pan	transcription factor	4	11	166	96.4	1	45	13	58	cassette exon	H/E/S/O
CG1906	CG1906	phosphatase	3R	5	55	100	1	39	6	45	cassette exon	H/E/S/T
CG4509	CG4509	Ca²⁺ dep cell adhesion	3R	3	91	96.7	1	55	50	105	cassette exon	L/P
CG9373	CG9373	RNA binding	3R	3	139	99.3	1	28	32	60	alternative 5′ splice site	H/E/S/O
CG10844	Rya-r44F	Ca²⁺ release	2R	22	113	95.6	2	0	8	8	mutually exclusive	H/E/T
CG31761	bru-2	RNA binding	2L	5	83	96.4	2	15	65	80	cassette exon	E/T

^a(CNS) conserved noncoding sequence.

^b(H) head, (E) embryo, (S) S2 cells, (L) larvae, (P) pupal, (T) testes, (O) ovary, (N) none.