Skip to main content
. 2005 Feb;11(2):197–209. doi: 10.1261/rna.7149605

FIGURE 4.

FIGURE 4.

Interstrand contacts established in the RNA (K2 RNA). (A) The interstrand contact formed between the O2′ atom of A29 and the N1 atom of A44. (B) Hydrogen-bonding distance between the O2′ atom of A29 and the N1 atom of A44 in the bound (red curve) and unbound RNA (black curve) during the MD-LES trajectories. (C) The interstrand contact formed between the N2 atom of G45 and the O3′ atom of A33. (D) Hydrogen-bonding distance between the N2 atom of G45 and the O3′ atom of A33 in the bound and unbound RNA during the MD-LES (red and black curves) and MD+LES (green and blue curves) trajectories.