TABLE 2.
The T. brucei H/ACA-like RNAs
| Name | Sequence | Homolog | Previous name or trypanosome homolog |
| TB6Cs1H1 | GGCTAGCGAAAACACAGGCGTTTTGCTTACGTCAATCACTGCGTCTGCACCTGTGCTACC CGAGAGTT | ||
| TB6Cs1H2 | CGAGCCCCGTGGGTGAGGCGGCGGCGGTAACTCTTTGGTGCTGTGACGGCCTCAATCG GACCCGCGAGAGCT | LC-H4 | |
| TB6Cs1H3 | GTACCGCGGGTTGCACCGTTGCGGGACACGCTGATTGTCCATGTGACGGACTTGCCTGT GGAAGAGTG | ACA24 | |
| TB6Cs1H4 | ACACCTCATTATTAAAGGTCCCTTGGCGACTGTACTTATCGATGCCGCTCCACAGGATACC CATTGAGGTTAGATGC | ||
| TB6Cs2H1 | GAAACACAGAAATCGTGATCCCTATTGATACACGTTTTTCAGCTGCGGATTATCAAAACTG TGTGAGATGA | ||
| TB8Cs2H1 | ACACCTCCGCTTCGCTCGTGGCATTCTTCCAGTGAGCGCACTTACGATGGATGGTGGAGG AAGAATA | ||
| TB8Cs3H1 | CAATGAGGTTCGAATGCGCCTGACGGTTTTTGTCCGACGTGGTGTGGGAAACGCCTCAAA GAAGT | LC-H3 | |
| TB9Cs1H1 | ACAGCACAGAAAATGAAGCTAGTTATGGCGTACCGCTGCTGCTCTAGTGCCGACACTGTG CGAGATGC | SnR34 | LC-H1 |
| TB9Cs1H2 | ACACGGGGCAATCCGAGGTCAGTGAGCTTCACTTCGTGCCGCATGATGCCTTCTGGTGG CTCCGGAGAAGC | LC-H9 | |
| TB9Cs1H3 | AGAACGCGCTATTAGCTCCCAACGGGTATGACTGCTTCCACTTGGGTTCCTGAGGCGTGT GAGAGTG | LC-H8 | |
| TB9Cs2H1 | AAGGCCCACATTGGAGTTGTGTCTTGGGCTAACATTTCTGTGTCCTTGTTTGCACACTCAC GTGGTCCGAGAATT | ||
| TB9Cs2H2 | AAAGGGGCTTTAGCCATGGAGCGGCCGTTTTGTGATTGCATGCCGTAGGCCATCTTGGTG CGCTCCGAGAGTT | ACA10 | |
| TB9Cs3H1 | GAAGCACAATTTACACGGATTCACCCTGACTTATATTTTAATGCCGGTGTTATCCGCCAGT GTTGTGCCAGATAT | SnR34 | LC-H5 |
| TB9Cs3H2 | CGAGTGCCCTCAGGTATTGTGGTGTTTGTTGCTTATCGCCATCACAGGTTCAAGAGGCAC AAGAAGT | Atsnor77 | |
| TB9Cs4H1 | TAAGGTTGCCTGTGTACCTCATGCGTCTCTTTGTGGTGTTGTGGGGAATGAAGGCGACCG AGATAC | ||
| TB9Cs4H2 | GTAGGCCCGCCAGCTACCACGTGGAGTGTATACTCTCTATCTCTACGACGGTCGTTCTACC GGGCCAAGAAAC | SnR37 | |
| TB9Cs4H3 | TAAGTTTATTATTATCATTGTTTCAAGAAAGACAAAACTATCCGTAAACGAGAAAA | ||
| TB10Cs1H1 | TCATCCCCTTTAATAGCGAGTGGTCTTTGTGTGCATCTCCGCAAACCACTCGTCTACACCG GGGGAAAGATAA | ||
| TB10Cs1H2 | CGAGCACTCATTTCAAGCTGCGCGAGCATAAGCGTGTTGCTCCGTGGTCGGGTGACGTG CGAGACAC | ||
| TB10Cs1H3 | GCAGGAACGTGGCAGGCTACCGAGGTCACACTCGTGCTTCGCGTGGTTCAACAACATGG TCCCAGATTG | ||
| TB10Cs2H1 | TACGGCGTTGTCGGTTGGGCCAGTGGCAAATTTTATCCCTGCAGCCCTATCTCGCAACTC CTAGAACC | Atsnor93 | |
| TB10Cs2H2 | TCAGGGAGTTCTGTACGCCGCTGAGTGGTATTGCTCGCTTAGTGGAGCGATTTACTCCCC AGATTT | ||
| TB10Cs3H1 | AGCAGTGTCGCTATGCGTTCCCGTCAGTAATACGGGCTAACGGTACGAAGCACGTGCGA GAGGT | ACA10 | |
| TB10Cs3H2 | GCAGCCGCCCCGGGCAGGATGGCGCCCGTGTCCTTGGCGTGACGTCTAATCGGTGCGG CGAGATGT | SnR32 | |
| TB10Cs4H1 | TTATTTCTTTTCATATGTACAAACCTAAGGCAGTACCAAAATACGCTTATCACTCATCACCCA AGAAAAATAGACAG | ||
| TB10Cs4H2 | TTACCGTCTCTGTCTAACGCCTCACATGTGCAGAAATCGTTGTGGGGCGATTCAGGAGGC GGAGATAT | ||
| TB10Cs4H3 | CGACGCCCATACAACCGCCCCACACCGTGCTTTGCATGCATTGTGGGGTGATACATGTGG CGGAGATGT | ||
| TB10Cs4H4 | TGAGGAGGCCCGTAGCCACGGCATGCCTTTTTGGTGGTGCGTTGTGGGTGGTGGCTTTC CAAGAGGC | ||
| TB11Cs2H1 | AAAGCTCTTTTATGTAGTGTGCGTACCACGAAAGTAGCAGGTACTGCACACGAAACTGGA GAGCGAGACTC | SLA1 | |
| TB11Cs3H1 | AAAGCCCTCATGAACAATCCCACCGGTGAGTGTACTCATTTAATCTCGTGCGTGGACCTAG GAGCGCCAAGATTT | ||
| TB11Cs3H2 | TCGTTGTACCGAATGTGGCGTGAGCGTTGTGCATACCGGCGTATTCGCAATGCCGCCCTA AACGTACAAAGATTG | ||
| TB11Cs4H1 | AAATCTTACCCTGTCTAGCTGCCTGTCAGTATACTTTCGGTGACGGTATTGGCTCGAAAGT GTAAGAGAGATCG | ||
| TB11Cs4H2 | AGAGGTATGCATTGAGACCCACTGCCTTCATATGTAGGCGAGTGGGAGCATCAGCATCCC GAGATAA | LC-H7 | |
| TB11Cs4H3 | ACAGCGCAGCATCCCTTGGGCCAGTGGCAACCATTTAATGCCGTGGGGATGTGGCCCCT GTCCTGTTGCGCGAGAGCC | LC-H6 |
The sequences (±3 nt in 5′-end) were obtained from the T. brucei genome database. The coding region is predicted based on the position of the AGA-box and the secondary structure. The AGA-box and the “A” 1 nt upstream from the stem are shown in bold letters. Homolog names in other organisms are given.