AGES	Austrian Agency for Health and Food Safety
bp	base pair
CEC	central European clade
CI	confidence interval
Cq	cycle threshold
EU	European Union
GC	guanine–cytosine
HERA	Health Emergency Preparedness and Response Authority
IVET	Institute for Veterinary Disease Control
MFP	ModelFinder Plus
ML	maximum likelihood
N/A	not available
NCBI	National Center for Biotechnology Information
NGS	next-generation sequencing
ONT	Oxford Nanopore Technologies
PCR	polymerase chain reaction
RT-PCR	reverse-transcription polymerase chain reaction
SD	standard deviation
SEEC	south-eastern European clade
WGA	whole-genome amplification
WGS	whole-genome sequencing
WNV	West Nile virus