Table 2. IS elements identified in genomes of Sf301, MG1655 and EDL933, the virulence plasmid, and pWR501, from S.flexneri 5a.
Name | Length (bp) | No. of ORFs | No. of intact elements | No. of partial elements | ||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|
Sf301 | K12 | 0157 | pCP301 | pW501 | Sf301 | K12 | 0157 | pCP301 | pWR501 | |||
IS1 | 768 | 2 | 108 | 6 | 2 | 2 | 3 | 9 | 0 | 0 | 1 | 1 |
iso-IS1 | 803 | 2 | 0 | 0 | 0 | 0 | 0 | 1 | 0 | 3 | 5 | 5 |
IS2 | 1331 | 2 | 30 | 6 | 1 | 1 | 2 | 5 | 1 | 0 | 2 | 2 |
IS3 | 1258 | 2 | 5 | 5 | 0 | 0 | 0 | 3 | 0 | 2 | 7 | 8 |
IS4 | 1428 | 2 | 18 | 1 | 0 | 1 | 1 | 3 | 0 | 0 | 1 | 2 |
IS5 | 1198 | 1 | 0 | 10 | 0 | 0 | 0 | 0 | 1 | 0 | 0 | 0 |
iso-IS10Ra | 1329 | 1 | 13 | 0 | 0 | 2 | 0 | 0 | 0 | 0 | 0 | 0 |
IS21 | 2131 | 2 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 3 | 3 |
IS91 | 1830 | 1 | 3 | 0 | 0 | 0 | 0 | 2 | 0 | 0 | 6 | 6 |
IS100 | 1963 | 2 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 7 | 6 |
IS150 | 1443 | 3 | 0 | 1 | 0 | 0 | 0 | 5 | 0 | 0 | 2 | 2 |
IS186 | 1372 | 1 | 0 | 3 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
IS600 | 1264 | 2 | 35 | 0 | 0 | 3 | 2 | 17 | 1 | 6 | 10 | 13 |
IS629 | 1310 | 2 | 10 | 0 | 18 | 8 | 5 | 11 | 0 | 3 | 3 | 9 |
IS630 | 1164 | 1 | 0 | 0 | 0 | 1 | 1 | 0 | 0 | 4 | 2 | 2 |
IS911 | 1250 | 2 | 16 | 0 | 0 | 1 | 1 | 0 | 4 | 0 | 0 | 0 |
IS1294 | 1714 | 1 | 0 | 0 | 0 | 1 | 2 | 3 | 0 | 0 | 7 | 4 |
ISSfl1 | 929 | 1 | 0 | 0 | 0 | 1 | 1 | 0 | 0 | 0 | 2 | 3 |
ISSfl2 | 1374 | 1 | 6 | 0 | 0 | 2 | 2 | 0 | 0 | 0 | 1 | 0 |
ISSfl3 | 1302 | 1 | 0 | 0 | 0 | 1 | 1 | 1 | 0 | 0 | 1 | 1 |
ISSfl4 | 2754 | 3 | 3 | 0 | 0 | 2 | 2 | 7 | 0 | 1 | 2 | 2 |
Total | 247 | 32 | 21 | 26 | 23 | 67 | 7 | 19 | 62 | 69 |
aiso-IS10R is a homolog of IS10R identified in Sf301 in this study.