Table 3. Position of the large two-copy repeats of C.pneumoniae CWL029, including the elements, where they are (gene or intergenic), the length of the repeat, and the existence of a repeat in the other two sequenced strains.
| Position 1 | Position 2 | Type | Length | Element 1 | Element 2 | Other strains |
|---|---|---|---|---|---|---|
| 26238 | 29415 | D | 23 | pmp_4.2 | pmp_5.2 | None |
| 234959 | 236693 | D | 27 | oppA_1 | oppA_2 | J138 AR39 |
| 259232 | 259385 | D | 26 | Intergenic | tgt | J138 AR39 |
| 290023 | 292838 | D | 40 | CPn0255 | Intergenic | J138 AR39 |
| 415142 | 416513 | D | 31 | CPn0369 | CPn0370 | J138 AR39 |
| 495909 | 498766 | D | 23 | pmp_7 | pmp_8 | J138 AR39 |
| 501979 | 514804 | D | 24 | pmp_9 | pmp_13 | J138 AR39 |
| 522778 | 525176 | D | 28 | CPn0457 | CPn0458 | J138 AR39 |
| 528528 | 530945 | D | 29 | CPn0461 | CPn0462 | J138 AR39 |
| 1111630 | 1113279 | D | 1650 | glmS tyrP_1 | yccA tyrP_2 | AR39 |
| 207095 | 208884 | I | 35 | CPn0165 | CPn0169 | J138 AR39 |
| 493543 | 506266 | I | 23 | pmp_6 | Intergenic | J138 AR39 |
| 954974 | 955029 | I | 32 | CPn0843 | CPn0843 | J138 AR39 |
D stands for direct repeats, and I for inverted repeats. The ppp elements are not displayed in this table because they are seven copy repeats (see Fig. 1).