Table 1. The parameters of the hemiknot DNA structures with large loops.
Arm 1 | Arm 2 | Loop size | Arm 1:arm 2 ratio | Loop:arms ratio | |
---|---|---|---|---|---|
Experimental values | 37.3 ± 5.7 nm | 50.5 ± 8.1 nm | 48.1 ± 7.5 nm | 0.74 ± 0.18 | 0.54 ± 0.12 |
Expected from the sequence | 170 bp | 215 bp | 188 bp | 0.79 | 0.49 |
44.4 nma | 56 nma | 49.1 nma |
aThe conversion factor from base pairs to nanometers (0.26) was calculated from the AFM length measurements of a linear 573 bp fragment.