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. 2002 Nov 15;30(22):4952–4959. doi: 10.1093/nar/gkf631

Table 1. PPG increases substitution on Tm of ODNs.

  5′-Probe Sequence-3′ g content aTm°C Tm°C bΔTm/base
 
 
 
X = PPG
X = G
 
1 CCAACACTCXTXAA 2/14 54.9 52.9 1.0
2 CCACCCXCCTCAX 2/13 60.7 59.7 0.5
3 CTXTAAXTAXATATAAC 3/17 51.8 49.5 0.8
4 XATTACCTXXATTT 3/14 50.6 48.8 0.6
5 XTAAXTAXACACAXC 4/15 59.5 53.5 1.5
6 XTAAXTAXXCATAAC 4/15 55.7 53.2 0.6
7 CXXCTACATXCTXX 5/14 61.1 58.8 0.5
8 XTAAXTAXACXAXC 5/15 62.9 56.7 1.2
9 XTAAXTAXXCXCAXC 6/15 65.5 58.2 1.2
10 CAXXXAXCTTTXXA 6/14 59.9 56.4 0.6

aMelting temperature (Tm) of DNA duplexes formed with ODNs containing G or PPG at the X positions. The accuracy of the Tm determination is ±0.2°C according to the instrument manufacturer (Cary 400 Bio UV/Vis Spectrophotometer, Varian, Palo Alto, CA).

bΔTm/base is the average increase in Tm per base when G is substituted with PPG.