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. 2002 Sep 1;30(17):3839–3847. doi: 10.1093/nar/gkf504

Table 1. Strains, plasmids and oligonucleotides used in this study.

Name Relevant genotype or sequence (5′→3′) Reference or orientation
Escherichia coli    
 ER2169 mcrBC, λDE3, pLysS, pSYX20-NlaIIIM, CmR, KanR (15)
Helicobacter pylori    
 60190 iceA1, cagA+, vacA s1a m1 (9,10,12)
 CH4 iceA1, cagA+, vacA s1a m2 (9,10,12)
Plasmids    
 pSYX22 pET11-derived vector, AmpR (15)
 pQXCH4 CH4 iceA1 in pSYX22 This study
 pQX60A 60190 iceA1 starting from ATG site, in pSYX22 This study
 pQX60T 60190 iceA1 starting from TTG site, in pSYX22 This study
 pQX60R The repaired iceA1 of 60190 in pSYX22 This study
Primers    
 IceA60A-F CACACATATGTGTGGTGTGCGTGGCAACTC Forward
 IceA60T-F TAGCCATATGGCTAAAGAATTTAATTTGGAG Forward
 IceACH4-R GTTGGATCCGTCGACGTAGTTCATTGCAACCG Reverse
 IceA-F GTTGGATCCTTAAGGAGGTTTAACATATGAGTAAAAGTAAAAAG Forward
 IceA-R GTTGGATCCGTCGACGTAGTTCATTGCAACC Reverse
 Fix-F GGTCTGCAGCTAGGTAATGGGGGGAGTTGGTGCAGG Forward
 Fix-R TAGCTGCAGTCCTTGGTATTTTCC Reverse