Table 1. G4122E mutant DNA-PKcs supports reduced levels of VDJ recombination.
Expression vectors | Experiment | Signal (pJH201) AmpR + CamR / AmpR | Ratea (%) | Fidelityb (%) | Coding (pJH290) AmpR + CamR / AmpR | Ratea (%) |
---|---|---|---|---|---|---|
No RAGS | 1 | 0/5560 | 0.00 | 0/22 380 | 0.00 | |
2 | 0/660 | 0.00 | 0/0 | 0.00 | ||
3 | 0/91 080 | 0.00 | 1/114 960 | 0.00 | ||
4 | 0/85 840 | 0.00 | 1/40 368 | 0.00 | ||
RAGS | 1 | 11/6380 | 0.17 | 0/44 000 | 0.00 | |
2 | 0/840 | 0.00 | 0/0 | 0.00 | ||
3 | 31/63 120 | 0.05 | 0/53 760 | 0.00 | ||
4 | 40/22 736 | 0.18 | 0/79 576 | 0.00 | ||
0.09 ± 0.04c | ||||||
Wild-type DNA-PKcs | 1 | 127/3300 | 3.85 | 70 (7/10) | 114/21 000 | 0.54 |
2 | 7/720 | 0.90 | ND | 10/3120 | 0.32 | |
3 | 496/32 520 | 1.52 | 80 (8/10) | 402/60 360 | 0.67 | |
4 | 230/9976 | 2.31 | 100 (7/7) | 345/49 300 | 0.70 | |
2.2 ± 0.64c | 86.7 ± 7.6d | 0.56 ± 0.09c | ||||
G4122E DNA-PKcs | 1 | 34/3760 | 0.90 | 90 (9/10) | 8/16 080 | 0.05 |
2 | 2/1560 | 0.13 | ND | 4/2640 | 0.16 | |
3 | 140/31 080 | 0.45 | 89 (8/9) | 50/100 800 | 0.05 | |
4 | 188/35 380 | 0.53 | 90 (9/10) | 54/57 072 | 0.09 | |
0.50 ± 0.16c | 89.0 ± 0.3d | 0.09 ± 0.03c |
aRate is the percentage of replicated substrates that underwent V(D)J recombination and is derived from the formula [AmpR + CamR / AmpR] × 100.
bFidelity is expressed as the percentage of recovered signal joints that were susceptible to ApaLI digestion.
cAverage recombination rate ± SEM.
dAverage fidelity ± SEM.