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. 2002 Dec 1;30(23):5160–5167. doi: 10.1093/nar/gkf651

Table 2. Oligomer sequence, Tm values and inhibition of luciferase activity data by LNAs and LNA–DNA chimeras that target the start site of the luciferase mRNA.

ID Sequence 5′→3′ Tm (°C) DNA:DNA Tm (°C) LNA:DNA Inhibition (%)
        25 nM 100 nM 200 nM
XI  GtcTTccaTTTTAcC 50 65 13 10 0
XII  GTCTTCCATTTTACC 50 89 60 73 81
XIII  CgtcTtccaTtttaCcaacAgtacC 70 74 2 0 12
XIV  CGtCTtcCATttTacCAaCagTACC 64 ND 38 52 62
XV  GTCTtccatttTACC 50 64 29 58 78
XVI  TTTTggcgtctTCCA 48 68 12 42 49
XVII  GTCTTCcattttacC 50 60 72 78 86
XVIII  GTCTTCCattttacC 50 66 74 79 87
XIX  GTCTTccattttacC 50 56 0 0 19
XX  GTCTtccattttacC 50 53 0 0 0
XXI  GTCttccattttACC 50 60 30 52 73
XXII  GTCTtccattttACCA 50 66 43 53 68
XXIII GCGTCttccattttACCAA 60 67 75 90 96
XXIV  GTCTTCCAtttta⁁c⁁c 50 68 38 51 62
XXV g⁁t⁁cttccATTTTACC 50 67 0 3 48

Capitalized letters within a sequence represent LNA bases, lower case letters represent DNA bases, ⁁ indicates phosphorothioate linkages and underlined bases depict mismatches relative to luciferase mRNA. ND, Tm not determined because it was too high to accurately measure.