TABLE 3.

The 49 RFAM entries used for testing

RF00001	RF00005	RF00008	RF00015	RF00031	RF00032	RF00037	RF00041	RF00045	RF00048
RF00049	RF00062	RF00066	RF00095	RF00097	RF00098	RF00102	RF00105	RF00163	RF00164
RF00167	RF00169	RF00175	RF00181	RF00198	RF00199	RF00214	RF00215	RF00233	RF00238
RF00250	RF00260	RF00309	RF00374	RF00375	RF00376	RF00386	RF00389	RF00436	RF00451
RF00465	RF00467	RF00468	RF00469	RF00480	RF00481	RF00485	RF00497	RF00506

The entries represent alignments with at least 20 sequences and a file size of <10 kilobytes when using not >40 representative sequences.