. 2006 Mar;12(3):508–521. doi: 10.1261/rna.2305406

TABLE 3.

Oligonucleotides

Oligo	Target	Sequence
JA11	*tRNA_i Met	TCGGTTTCGATCCGAGGACATCAGGGTTATGA
JA99	*5S rRNA	TCGCGTATGGTCACCCACTACA
JA133	*5S rRNA	TGGTAGATATGGCCGCAACC
JA134	*5S rRNA	AGATTGCAGCACCTGAGTTTC
JA151	*tRNA_CAA^Leu	TGGTTGCTAAGAGATTCGAAC
JA48	*5′ IMT3	ACGGCGCTTAACTTTTATG
JA66	*5′ IMT4	GGCGCTTAGCCAACTTG
JA72	*5′ IMT2	GGCGCTGCTAAATCATGAG
JA382	*5′ IMT1	CACGGCGCTGCTAATCTTGCAATGCCTCT
JA114	*tRNA_UAU^ILe	TGCTCGAGGTGGGGWTTGAACCCACGACGG
JA15	*tRNA_e^Met	TGCTCCAGGGGAGGTTCGAACTCTCGACC
JA275	trf4-236	CCGATTTGTATTTGCCTGGTAGCGCTATTGCTTGCGTGGTAACGAGCG
JA276	trf4-236	CGCTCGTTACCACGCAAGCAATAGCGCTACCAGGCAAATACAAATCGG
JA311	oligo d(T) adaptor	GGCCACGCGTCGACTACTTTTTTTTTTTTTTTTT
JA310	Adaptor	GGCCACGCGTCGACTAC
JA150	tRNA_i^Met	TGGCGCAGTGGAAGCGC
JA193	TRF4	GATGTACAGTTCAGTGCATC
JA194	TRF4	GTGTGAATAAGCAAGGGAAC
JA346	5′ TRF5 deletion	TTATTTTTCAAATAAACAAACGAGGGCGGAGTTTATTGGGTCGTCCGTACGCTGCAGGTCGAC
JA347	3′ TRF5 deletion	AAGAGCCTGGCCTTTAGAGAGCCAGTAGTCCCTTCTCGTTTGAGCATCGATGAATTCGAGCTC

*Deoxyoligonucleotides used in Northern hybridization.