Table 2.

Chromosome number analysis

Chromosome	No. of virtual tags	NLB		DiFi
		No. of observed tags	Tag density	No. of observed tags	Tag density	Chromosome content
1	61,694	10,090	0.16	6,991	0.11	1.4
2	61,944	9,422	0.15	9,545	0.15	2.0
3	46,337	6,732	0.15	7,379	0.16	2.2
4	41,296	5,581	0.14	3,666	0.089	1.3
5	43,186	6,216	0.14	4,136	0.10	1.3
6	41,633	6,120	0.15	7,291	0.18	2.4
7	38,928	5,836	0.15	9,875	0.25	3.4
8	35,033	5,009	0.14	3,260	0.093	1.3
9	30,357	4,909	0.16	4,861	0.16	2.0
10	37,320	6,045	0.16	4,865	0.13	1.6
11	37,868	6,081	0.16	5,432	0.14	1.8
12	30,692	4,631	0.15	4,056	0.13	1.8
13	22,313	3,012	0.13	5,197	0.23	3.5
14	23,378	3,658	0.16	3,171	0.14	1.7
15	22,409	3,581	0.16	4,159	0.19	2.3
16	23,028	4,119	0.18	3,201	0.14	1.6
17	22,978	4,298	0.19	3,145	0.14	1.5
18	18,431	2,712	0.15	2,389	0.13	1.8
19	16,544	3,271	0.20	3,589	0.22	2.2
20	20,585	3,573	0.17	5,460	0.27	3.1
21	9,245	1,465	0.16	1,036	0.11	1.4
22	12,579	2,476	0.20	1,655	0.13	1.3
X	30,737	2,249	0.073	3,147	0.10	1.4
Y	2,347	159	0.068	9	0.00	0.06
Total	730,862	111,245	0.15	107,515	0.15	2.0

^*DiFi chromosomal content is calculated for autosomal chromosomes as 2 times the ratio of DiFi tag densities to corresponding NLB tag densities, and for the X chromosome as the ratio of DIFI tag density to NLB tag density. Underlined values represent autosomal chromosome content <1.5, while boldface values represent autosomal chromosome content >3.