Table 3.

Semantic features (SGD8 dataset clusters). Top 10 terms of semantic features representing the eleven clusters obtained for the SGD8 dataset. An average semantic feature has been calculated from the characteristic features in each cluster obtained by two-way hierarchical clustering.

A. DNA repair and replication	repair, dna, replic, telomere, checkpoint, pcna, damag, dsb, recombin, mismatch
B. Lipid metabolism	sterol, fatti, lipid, ergosterol, synthetas, synthas, biosynthesi, actin, heat, sphingolipid
C. Response to stress	mitochondri, hsp70, ubiquitin, dna, oxid, chaperon, shock, rad52, heat, camp
D. Transport I	transport, membran, vesicle, golgi, outer, receptor, copii, export, snare, vacuolar
E. Transport II	vacuolar, v-atpas, membran, vacuol, vesicl, transport, golgi, glucose, transloc, cytosol
F. Transport III	transport, uptake, vesicle, vacuolar, vacuole, membran, permeas, nitrogen, ubiquitin, glucos
G. Mitochondria	mitochondria, mitochondri, mitochondrion, inner, ino1, matur, translat, transles, membrane-associ, membran
H. Gene expression (chromatin)	nucleosom, histon, swi, snf, chromatin, remodel, arrai, transcript, silenc, acetyl
I. Cell cycle	spindl, cyclin, kinetochor, checkpoint, anaphase, mitosi, mitot, sister, chromosom, replic
J. mRNA and protein biosynthesis	translat, mrna, ribosom, rna, poli, swi, snf, elong, transcript, atpas
K. Cell morphology response	actin, kinas, wall, phosphoryl, pheromone, mate, phosphates, cytoskeleton, glucose, polar