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. 2002 Oct 25;3:32. doi: 10.1186/1471-2105-3-32

Table 1.

Summary of contents of SeqHound database tables.

Database Table Contents Summary
ASNDBs GI and ASN.1 Bioseq – partitioned into divisions
PARTITION GI and division – master list
ACCDB GI, accession number, and database specific identifier (if available)
NUCPROT protein GI and DNA GI
PUBSEQ GI and MEDLINE identifier
REDUND GI and redundant group identifier
SENGI GI and SeqEntry identifier – partitioned into divisions
SENDBs SeqEntry identifier, ASN.1 SeqEntry and division
CHROM GI and chromosomal identifier from complete genome
TAXGI GI and taxonomy identifier
TAXDB Taxonomy hierarchy
GCODEDB Taxonomy identifier and genetic code
DIVDB Entrez division
MMGI GI and MMDB identifier
MMDB MMDB identifier and ASN.1 for 3-D structures (Biostruc)
DOMDB GI, ASN.1 structural domain and chain redundant set tag
NRBLASTDB GI and ASN.1 list of neighbours
BLASTDB Hashed pair of GIs and ASN.1 alignment from BLAST comparison
GO_PARENT Gene ontology
GO_NAME GO identifier and function name
GO_SYNONYM GO identifier and synonym
GO_REFERENCE GO identifier and reference to other databases (e.g. Enzyme Consortium)
LL_GO GI and GO identifier
LL_OMIM GI and Online Mendelian Inheritance in Man identifier
LL_LLINK GIs, Locus Link identifier and chromosomal location
LL_CDD GI and Conserved Domain Database identifier extracted from Locus Link database
RPSDB GI and Conserved Domain Database identifier, details of alignment
DOMNAME Conserved Domain Database annotation