Table 1.
Summary of contents of SeqHound database tables.
| Database Table | Contents Summary |
|---|---|
| ASNDBs | GI and ASN.1 Bioseq – partitioned into divisions |
| PARTITION | GI and division – master list |
| ACCDB | GI, accession number, and database specific identifier (if available) |
| NUCPROT | protein GI and DNA GI |
| PUBSEQ | GI and MEDLINE identifier |
| REDUND | GI and redundant group identifier |
| SENGI | GI and SeqEntry identifier – partitioned into divisions |
| SENDBs | SeqEntry identifier, ASN.1 SeqEntry and division |
| CHROM | GI and chromosomal identifier from complete genome |
| TAXGI | GI and taxonomy identifier |
| TAXDB | Taxonomy hierarchy |
| GCODEDB | Taxonomy identifier and genetic code |
| DIVDB | Entrez division |
| MMGI | GI and MMDB identifier |
| MMDB | MMDB identifier and ASN.1 for 3-D structures (Biostruc) |
| DOMDB | GI, ASN.1 structural domain and chain redundant set tag |
| NRBLASTDB | GI and ASN.1 list of neighbours |
| BLASTDB | Hashed pair of GIs and ASN.1 alignment from BLAST comparison |
| GO_PARENT | Gene ontology |
| GO_NAME | GO identifier and function name |
| GO_SYNONYM | GO identifier and synonym |
| GO_REFERENCE | GO identifier and reference to other databases (e.g. Enzyme Consortium) |
| LL_GO | GI and GO identifier |
| LL_OMIM | GI and Online Mendelian Inheritance in Man identifier |
| LL_LLINK | GIs, Locus Link identifier and chromosomal location |
| LL_CDD | GI and Conserved Domain Database identifier extracted from Locus Link database |
| RPSDB | GI and Conserved Domain Database identifier, details of alignment |
| DOMNAME | Conserved Domain Database annotation |