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. 2006 Feb 17;7:76. doi: 10.1186/1471-2105-7-76

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Copyright © 2006 Bi and Rogan; licensee BioMed Central Ltd.

This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/2.0), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.

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Bipad performance for various input sequence lengths. The graph shows the performance of Bipad (Y-axis) for recognition of S-MAR binding sites embedded in background sequences of varying lengths. Each S-MAR site was embedded in a background either with a uniform composition [black line], or having the average human genomic composition [blue line]. The background sequence was varied from 250 to 2000 bp in length (X-axis). The performance calculation is given in Reference [2]; each data point has been averaged over three replicates.