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Comparisons of clinical and clonal isolates
| Taxonomy | Clinical isolates | Rearrangement |
| Proteobacteria β | Bordetella pertussis | Inversions |
| Neisseria meningitidis | Inversions/translocations | |
| Neisseria gonorrhoeae | Inversions | |
| Proteobacteria γ | Shigella dysenteriae | Duplications |
| Pseudomonas aeruginosa | Inversions | |
| Actinobacteria | Mycobacterium tuberculosis | Deletions |
| Bacilli | Bacillus subtilis - | Inversions, translocations, |
| X-ray treatment | duplications and deletions |
