Table 1.
Array resources currently represented in RESOURCERER, with the total number of elements in each
Species | Dataset | Total number of elements |
Human | Research Genetics | 46,656 |
Operon Human | 13,972 | |
Affymetrix Human All | 63,175 | |
Affymetrix_HG-U95A | 12,626 | |
Affymetrix_HG-U95B | 12,620 | |
Affymetrix_HG-U95C | 12,646 | |
Affymetrix_HG-U95D | 12,644 | |
Affymetrix_HG-U95E | 12,639 | |
Rat | TIGR 13K Rat Set | 12,362 |
Affymetrix Rat All | 26,379 | |
Affymetrix_RG-U34A | 8,799 | |
Affymetrix_RG-U34B | 8,791 | |
Affymetrix_RG-U34C | 8,789 | |
Mouse | NIA | 15,247 |
BMAP | 11,136 | |
NIA + BMAP | 26,383 | |
Operon Mouse | 6,868 | |
Affymetrix Mouse All | 38,018 | |
Affymetrix_MG-U74A | 12,654 | |
Affymetrix_MG-U74B | 12,636 | |
Affymetrix_MG-U74C | 12,728 |
The Research Genetics human clone set is their sequence-verified collection [6]. The Operon oligonucleotide sets are available for human, mouse, and rat [10]. GeneChips™ from Affymetrix [11] are listed separately for each species, as well as collectively where, for example, 'Affymetrix Mouse All' is MU-74A + MU-74B + MU-74C. In mouse, the BMAP clone set was derived through the Brain Molecular Anatomy Project [7], and the NIA clone set was developed by M. Ko through a survey of mouse developmental stages [8,9]. The TIGR Rat 13K set was produced through an NHLBI funded project to generate a collection of unique, annotated rat cDNA clones.