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. 2006 Feb;72(2):1667–1671. doi: 10.1128/AEM.72.2.1667-1671.2006

TABLE 2.

Differently expressed genes during conidial development of Fusarium oxysporum strains ATCC 16416 and AFu68a

Clone no. and class Mean fold change in global normalized array data
Annotationb Uniprot no. E value
Conidia
Germ tubes
Mycelia
416 68 416 68 416 68
Class I: high expression in conidia
    FU022b10 4.94 4.93 2.43 1.90 1.23 1.95 Phosphate permease PHO89 (Saccharomyces cerevisiae) P38361 3E−17
    FU030f08 3.65 5.46 0.95 0.31 0.76 0.21 Hypothetical 30.7-kDa protein in RVS161-ADP1 intergenic region (S. cerevisiae) P25613 4E−35
    FU032e11 1.65 1.99 0.16 0.11 0.15 0.17 Phosphate-repressible phosphate permease (Neurospora crassa) P15710 2E−51
    FU042d01 2.14 1.17 0.44 0.31 0.28 0.26 Similar to hypothetical 17.2-kDa protein in PCT1-ADE3 intergenic region (S. cerevisiae) P42937 4E−07
    FU054d09 4.59 12.6 2.28 1.77 2.19 0.48 Nitrite reductase (N. crassa) P38681 1E−33
    FU098e01 1.84 0.75 0.68 0.17 0.62 0.29 Similar to maleylacetate reductase (Burkholderia cepacia) Q45072 0.001
    FU101d09 8.17 8.35 2.79 3.39 0.79 2.22 P68-like protein (Schizosaccharomyces pombe) P24782 8E−55
    FU101g06 5.39 4.67 1.90 0.72 0.65 0.56 Glyxoxylate pathway regulator (Yarrowia lipolytica) P41943 2E−17
    FU112e10 4.29 5.62 1.66 2.00 0.93 1.49 Similar to hypothetical 25.3-kDa protein in TIM23-ARE2 intergenic region (S. cerevisiae) P53721 7E−06
Class II: low expression in conidia
    FU058f02 0.13 0.28 0.66 1.94 0.64 2.4 ATP synthase beta chain, mitochondrial precursor (N. crassa) P23704 1E−20
    FU067h12 0.71 0.17 1.58 1.42 1.85 1.63 O-Acetylhomoserine (Emericella nidulans) P50125 3E−14
    FU077a03 1.10 0.79 3.30 3.22 2.58 2.84 Similar to clock-controlled protein 6 (N. crassa) Q01302 3E−5
    Class III: high expression in germ tubes
    FU017d03 0.33 0.68 0.96 2.14 0.44 0.34 60S ribosomal protein L37 (E. nidulans) Q9C0T1 2E−31
    FU037g10 1.07 0.76 2.65 3.04 0.82 1.22 40S ribosomal protein S29 (N. crassa) Q9C2P2 4E−24
    FU044h11 1.26 1.35 2.9 6.89 0.64 2.05 Probable 5-methyltetrahydropteroyltriglutamate-homocysteine methyltransferase (S. pombe) Q9UT19 1E−40
    FU048e10 0.34 0.45 1.1 1.14 0.25 0.41 Similar to 60S ribosomal protein L36 (Trichoderma hamatum) Q9HFR7 2E−08
    FU066a05 1.41 1.44 3.87 6.96 1.2 3.06 Similar to hypothetical protein (N. crassa) Q7S2C2 6E−06
    FU079a07 2.44 2.12 6.07 4.27 0.48 0.95 60S acidic ribosomal protein P2 (Fusarium culmorum) Q8TFM9 3E−18
    FU082e01 0.7 0.49 1.94 1.53 0.41 0.46 60S ribosomal protein L44 (Pichia jadinii) P52809 1E−52
    FU084a11 3.29 5.57 7.96 12.7 1.06 3.75 60S acidic ribosomal protein P2 (Alternaria alternata) P42037 9E−23
    FU110d07 0.65 0.58 1.85 1.19 0.22 0.21 60S ribosomal protein L38 (N. crassa) Q9C2B9 2E−14
    FU117f01 1.05 1.28 2.94 7.99 1.22 2.41 Anucleate primary sterigmata protein A (E. nidulans) Q00083 3E−21
Class IV: low expression in germ tubes
    FU026c01 1.74 2.15 0.65 0.82 1.83 1.89 Leptomycin B resistance protein Pmd1 (S. pombe) P36619 2E−26
    FU090g08 1.26 3.02 0.2 0.12 0.59 0.26 Similar to hypothetical 30.7-kDa protein in RVS161-ADP1 intergenic region (S. cerevisiae) P25613 3E−09
Class V: high expression in mycelia
    FU055h10 4.70 6.09 2.72 5.32 16.1 12.7 Ras-related protein Rab-11B (Rattus norvegicus) O35509 9E−16
    FU063c02 0.59 0.36 0.48 0.51 12.6 1.43 Similar to protein FDD123 (Coriolus versicolor) O74631 7E−04
Class VI: low expression in mycelia
    FU002a03 4.81 2.89 4.26 0.82 0.87 0.37 Similar to nitrate reductase (NADPH) (Fusarium oxysporum) P39863 1E−08
    FU007c04 0.85 0.92 2.04 1.49 0.25 0.25 60S ribosomal protein L38 (N. crassa) Q9C2B9 4E−27
    FU007e11 1.00 1.21 1.95 3.06 0.39 0.6 40S ribosomal protein S18 (S. cerevisiae) P35271 8E−64
    FU009c09 1.45 0.79 1.38 0.78 0.50 0.33 Similar to probable eukaryotic translation initiation factor 3 subunit 11 (Drosophila melanogaster) Q9W2D9 2E−10
    FU011c11 3.52 15.8 4.66 7.69 0.61 1.55 Flavohemoprotein (Bordotella pertussis) Q7TTP0 5E−34
    FU013c02 2.70 2.13 1.69 2.22 0.53 1.04 l-Lactate dehydrogenase A (Rhizopus oryzae) Q9P4NB6 5E−30
    FU040f06 0.99 0.91 1.06 0.80 0.36 0.33 Hypothetical UPF0327 protein NCU06495.1 (N. crassa) Q7RYI0 2E−29
    FU040g03 3.26 2.25 1.98 1.40 0.8 0.7 Similar to arsenical resistance protein ACR3 (S. cerevisiae) Q06598 1E−06
    FU045g01 3.29 3.01 2.37 1.77 0.62 0.73 1-Phosphatidylinositol-4,5-bisphosphate phosphodiesterase 1 (Candida albicans) O13433 2E−16
    FU055a07 2.78 6.38 2.25 2.11 0.77 0.16 Flavohemoprotein (Pseudomonas derugtnosa) Q9I0H4 2E−14
    FU055e09 5.48 28.8 6.80 5.90 2.55 2.93 Nitrite reductase (Leptosphaeria maculans) P43504 2E−31
    FU071b09 0.82 0.89 0.79 2.93 0.21 0.43 60S ribosomal protein L18-B (S. pombe) Q8TFH1 4E−50
    FU073c12 0.38 0.43 0.83 0.53 0.17 0.07 40S ribosomal protein S24 (Rhizomucor racemosus) P14249 2E−16
    FU079a05 2.92 3.19 5.34 2.12 0.68 0.72 Ubiquitin (S. cerevisiae) P61864 1E−36
    FU079a07 2.44 2.12 6.07 4.27 0.48 0.95 60S acidic ribosomal protein P2 (F. culmorum) Q8TFM9 3E−18
    FU083h08 1.54 2.07 1.36 0.88 0.44 0.43 Clathrin coat assembly protein AP17 (R. norvegicus) P62744 3E−28
    FU085f01 1.72 1.21 3.02 1.07 0.22 0.13 60S ribosomal protein L33-A (S. pombe) Q9USX4 2E−38
    FU088a11 2.30 1.16 4.59 1.56 0.55 0.35 60S acidic ribosomal protein P1 (A. alternata) P49148 8E−28
    FU089a10 0.94 0.92 0.97 0.75 0.18 0.25 60S ribosomal protein L5 (N. crassa) O59953 1E−110
    FU097c03 0.77 0.82 1.04 1.07 0.36 0.18 60S ribosomal protein L14-A (S. cerevisiae) P36105 5E−13
    FU100e11 0.85 0.58 2.01 1.00 0.24 0.18 60S ribosomal protein L29 (S. cerevisiae) P05747 7E−14
    FU107b04 1.15 1.37 1.49 0.65 0.33 0.22 NHP2/L7aE family protein YEL026W homolog (Caenorhabditis elegans) Q21568 2E−30
    FU107d04 1.33 1.11 2.37 0.93 0.58 0.36 40S ribosomal protein S28 (N. crassa) Q7S6W5 1E−22
a

The differentially expressed genes were calculated by the program CyberT (http://visitor/ics.uci.edu/genex/cybert/), and the thresholds were P values (lnp) of <0.01 and changes of more than twofold.

b

The annotation “similar to” means that the E value was from 10−3 to 10−10, and annotations without these words means that the E value was <10−10.