TABLE 1.
RNAPs
| Group and PDB no. | Reference | Resolution (Å) | Description |
|---|---|---|---|
| Eukaryotes | |||
| 1I3Q | Cramer et al. (44) | 3.10 | RNA polymerase II crystal form I |
| 1I50 | Cramer et al. (44) | 2.80 | RNA polymerase II crystal form II |
| 1I6H | Gnatt et al. (57) | 3.30 | RNA polymerase II elongation complex |
| 1R9S | Westover et al. (195) | 4.25 | RNA polymerase II strand separated elongation complex, matched nucleotide |
| 1NIK | Bushnell et al. (28) | 4.10 | Wild-type RNA polymerase II |
| 1PQV | Kettenberger et al. (86) | 3.80 | RNA polymerase II-TFIIS complex |
| 1R5U | Bushnell et al. (29) | 4.50 | RNA polymerase II TFIIB complex |
| 1R9T | Westover et al. (195) | 3.50 | RNA polymerase II strand separated elongation complex, mismatched nucleotide |
| 1K83 | Bushnell et al. (27) | 2.80 | Yeast RNA polymerase II complexed with the inhibitor amanitin |
| 1NT9 | Armache et al. (7) | 4.20 | Complete 12-subunit RNA polymerase II |
| 1SFO/1R9R | Westover et al. (194) | 3.61 | RNA polymerase II strand separated elongation complex |
| 1TWA | Westover et al. (195) | 3.20 | RNA polymerase II complexed with ATP |
| 1TWC | Westover et al. (195) | 3.00 | RNA polymerase II complexed with GTP |
| 1TWF | Westover et al. (195) | 2.30 | RNA polymerase II complexed with UTP |
| 1TWG | Westover et al. (195) | 3.30 | RNA polymerase II complexed with CTP |
| 1TWH | Westover et al. (195) | 3.40 | RNA polymerase II complexed with 2′dATP |
| 1WCM | Armache et al. (8) | 3.80 | Complete 12-subunit RNA polymerase II |
| 1YIV | Kettenberger et al. (87) | 3.80 | Refined RNA polymerase II-TFIIS complex |
| 1YIW | Kettenberger et al. (87) | 4.00 | Complete RNA polymerase II elongation complex |
| 1YIY | Kettenberger et al. (87) | 4.00 | RNA polymerase II-TFIIS-DNA/RNA complex |
| 1Y77 | Kettenberger et al. (87) | 4.50 | Complete RNA polymerase II elongation complex with substrate analogue gmpcpp |
| Prokaryotes | |||
| 1HQM | Minakhin et al. (116) | 3.30 | Thermus aquaticus core RNA polymerase, includes complete structure with side chains |
| 116V | Campbell et al. (30) | 3.30 | Thermus aquaticus core RNA polymerase-rifampin complex |
| 11W7 | Vassylyev et al. (185) | 2.60 | RNA polymerase holoenzyme from Thermus thermophilus |
| 1L9U | Murakami et al. (119) | 4.00 | Thermus aquaticus RNA polymerase holoenzyme |
| 1L9Z | Murakami et al. (118) | 6.50 | Thermus aquaticus RNA polymerase holoenzyme/fork-function promoter DNA complex |
| 1SMY | Artsimovitch et al. (11) | 2.70 | Transcription regulation by alarmone ppGpp from Thermus thermophilus |
| 1YNJ | Campbell et al. (31) | 3.20 | Thermus aquaticus RNA polymerase-sorangicin complex |
| 1YNN | Campbell et al. (31) | 3.30 | Thermus aquaticus RNA polymerase-rifampin complex |
| 1ZYR | Tuske et al. (182) | 3.00 | Thermus aquaticus RNA polymerase-streptolydigin complex |
| 2A6E | Artsimovitch et al. (12) | 2.80 | Thermus aquaticus RNA polymerase apo-holoenzyme complex |
| 2A6H | Temiakov et al. (176) | 2.40 | Thermus aquaticus RNA polymerase-streptolydigin complex |
| 2A69 | Artsimovitch et al. (12) | 2.50 | Thermus aquaticus RNA polymerase-rifapentine complex |
| 2A68 | Artsimovitch et al. (12) | 2.50 | Thermus aquaticus RNA polymerase-rifabutin complex |